a database for spatially resolved transcriptomes

Dataset details

Technique Tomo-seq
Title Spatially resolved RNA-sequencing of the embryonic heart identifies a role for Wnt/β-catenin signaling in autonomic control of heart rate
PMID 29400650
Description Development of specialized cells and structures in the heart is regulated by spatially -restricted molecular pathways. To better understand these pathways and how they regulate cardiac development this study used tomo-seq, combining high-throughput RNA-sequencing with tissue-sectioning, to establish a genome-wide expression dataset with high spatial resolution for the developing zebrafish heart.
Source TL wildtype hearts dissected from live 2-day-old zebrafish embryos
Species zebrafish
No. genes 16023 genes
No. cells NA
Resolution cellular
Data normalization Spike-in normalization
Data availability GSE104057

Browse spatial gene expression

Gene/ENSEMBL ID:     Please input gene symbol: such as bmp4 or ENSDARG00000019995.
Sample:     Please select sample to browse.
Log:     Please select log transformation of data.