a database for spatially resolved transcriptomes

Dataset details

Technique Tomo-seq
Title Genome-wide RNA tomography in the zebrafish embryo
PMID 25417113
Description This study combined traditional histological techniques with low-input RNA sequencing and mathematical image reconstruction to generate a high-resolution genome-wide 3D atlas of gene expression in the zebrafish embryo at three developmental stages.
Source the yolk and straightened zebrafish embryos at the 15 somites stage (fish lines: TL, Tg(h2afva:h2afva-mCherry))
Species zebrafish
No. genes 14254 genes
No. cells NA
Resolution cellular
Data normalization Spike-in normalization
Data availability GSE59873

Browse spatial gene expression

Gene/ENSEMBL ID:     Please input gene symbol: such as magi1b or ENSDARG00000003169.
Embryo:     Please select embryo to browse.
Log:     Please select log transformation of data.