a database for spatially resolved transcriptomes


Technique Tomo-seq
Title Sequencing mRNA from cryo-sliced drosophila embryos to determine genome-wide spatial patterns of gene expression
PMID 23951250
Description Individual blastoderm stage Drosophila melanogaster embryos along the anterior-posterior axis were cryosectioned and the mRNA isolated from each 25 ┬Ám slice was sequenced. A genome-wide timecourse of spatial gene expression from shortly after fertilization through gastrulation was generated.
Source frozen embryo slices
Species drosophila
No. genes 15742 genes
No. cells NA
Resolution cellular
Data normalization FPKM
Data availability GSE43506