a database for spatially resolved transcriptomes

Dataset details

Technique Spatial transcriptomics
Title Spatially resolved transcriptomics enables dissection of genetic heterogeneity in stage III cutaneous malignant melanoma
PMID 30154148
Description Spatial transcriptomics (ST) was adapted to melanoma lymph node biopsies and successfully sequenced the transcriptomes of over 2,200 tissue domains.
Source lymph node metastases from four patients diagnosed with stage III melanoma
Species human
No. genes nearly 18,000 genes
No. cells NA
Resolution 100 um
Data normalization Median ratio normalization
Data availability Count matrixes for exploring genes / gene signatures of interest are available at www.spatialtranscriptomicsresearch.org

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