|Identification of spatially associated subpopulations by combining scRNAseq and sequentialfluorescence in situ hybridization data
|Seq-FISH combined scRNA-seq was applied to dissect the cell-type- and spatial-domain-associated heterogeneity in the mouse visual cortex region.
|brain sections (visual cortex region) from C57BL/6 with Ai6Cre-reporter (uncrossed) female mice aged 50-80 days
|Expression data, spatial coordinates, SVM predictions, HMRF domains, expression box plots categorized by domains and cell types, and interactive visualizations are available at http://spatial.rc.fas.harvard.edu. The scRNA-seq dataset referenced in this study is GSE71585.