a database for spatially resolved transcriptomes

Dataset details

Technique seqFISH
Title In situ transcription profiling of single cells reveals spatial organization of cells in the mouse hippocampus
PMID 27764670
Description SeqFISH was used to identify unique transcriptional states by quantifying and clustering up to 249 genes in 16,958 cells to examine whether the hippocampus is organized into transcriptionally distinct subregions.
Source brain sections (hippocampus) from C57BL/6 with Ai6Cre-reporter (uncrossed) female mice aged 50-80 days
Species mouse
No. genes 249 genes
No. cells 16,958 cells
Resolution single molecule
Data normalization -
Data availability Raw data can be found in the Supplemental Information.

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