a database for spatially resolved transcriptomes

Dataset details

Technique Liver single cell zonation
Title Paired-cell sequencing enables spatial gene expression mapping of liver endothelial cells
PMID 30222169
Description This study used paired-cell sequencing, in which mRNA from pairs of attached mouse cells were sequenced and gene expression from one cell type was used to infer the pairs' tissue coordinates. This method was applied to pairs of hepatocytes and liver endothelial cells (LECs).
Source livers from C57BL/6 mice, C57BL/6-Tg(CAG-EGFP) and C57BL/6-Actb-DsRed.T3 mice, male mice age 6–16 weeks
Species mouse
No. genes 18944 genes
No. cells 3151 cells
Resolution single-cell
Data normalization Fraction of the mean
Data availability GSE108561