a database for spatially resolved transcriptomes

Dataset details

Technique LCM-seq
Title Spatial reconstruction of single enterocytes uncovers broad zonation along the intestinal villus axis
PMID 30270040
Description This study established a comprehensive panel of landmark genes, characterized by RNA-seq of laser capture microdissected epithelial samples originating from differential villus zones. They used these to reconstruct the spatial tissue coordinates of enterocytes in scRNA-seq data and uncovered vast heterogeneity and spatial sub-specialization.
Source proximal Jejunum sections from three 8 week-old male C57BL/6 mice
Species mouse
No. genes 20882 genes
No. cells NA
Resolution cellular
Data normalization TPM
Data availability GSE109413, the corresponding raw and intermediary input files have been deposited in Zenodo (https://zenodo.org/record/1320734.).