a database for spatially resolved transcriptomes

Dataset details

Technique LCM-seq
Title Topographical transcriptome mapping of the mouse medial ganglionic eminence by spatially resolved RNA-seq
PMID 25344199
Description This study adapted the STRT (single-cell tagged reverse transcription) method to laser microdissected tissue samples. By systematically sampling the mouse medial ganglionic eminence (MGE) tissues in a regular grid, they isolated 50×50×50 μm3 cubes that are akin to the `voxels’ in a three-dimensional volumetric space.
Source wild-type and Gfra1Tlz mutant embryos (both C57bl6/J)
Species mouse
No. genes 14942 genes
No. cells NA
Resolution 50 um
Data normalization TPM
Data availability GSE60402

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