|Spatial transcriptome for the molecular annotation of lineage fates and cell identity in mid-gastrula mouse embryo
|This study documented the spatial transcriptome of the epiblast of the mid-gastrulation (E7.0 late mid-streak stage) mouse embryo, and performed low-input RNA sequencing (RNA-seq) analysis on individual populations (of about 20 epiblast cells each) that were sampled by laser capture microdissection at known positional addresses in single embryos.
|late mid-streak (∼E7.0) embryos of C57BL/6J mice
|Z score normalization
Spatially variable (SV) genes
SV genes identified by SpatialDE (Q-value<0.05)
Functional enrichment analysis of SV genes
GO enrichment analysis of SV genes identified by SpatialDE (Q-value<0.05) in mid-gastrula mouse embryo.
KEGG enrichment analysis of SV genes identified by SpatialDE (Q-value<0.05) in mid-gastrula mouse embryo.