a database for spatially resolved transcriptomes

Dataset details

Technique Geo-seq
Title Spatial transcriptome for the molecular annotation of lineage fates and cell identity in mid-gastrula mouse embryo
PMID 27003939
Description This study documented the spatial transcriptome of the epiblast of the mid-gastrulation (E7.0 late mid-streak stage) mouse embryo, and performed low-input RNA sequencing (RNA-seq) analysis on individual populations (of about 20 epiblast cells each) that were sampled by laser capture microdissection at known positional addresses in single embryos.
Source late mid-streak (∼E7.0) embryos of C57BL/6J mice
Species mouse
No. genes 20,000 genes
No. cells NA
Resolution cellular
Data normalization Z score normalization
Data availability GSE65924

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